表23 主な疾患から検出されたウイルス（2007年〜2016年累計）
| ウイルス型
| 診 断 名 | インフルエンザ | 咽頭結膜熱 | 感染性胃腸炎 | 手足口病 | ヘルパンギーナ | 咽頭炎・扁頭炎 |
肺・気管支炎 | 熱性疾患 | 発疹症 | 麻しん | 風しん | 先天性風しん症候群 | 伝染性紅斑 |
流行性耳下腺炎 | 無菌性髄膜炎 | 脳炎・脳症 | SFTS | ヘルペス感染症 | その他 | 計 |
| アデノ | 1 | 3 | 26 | 18 | 4 | | 11 | 10 | 15 | 4 | | |
| | | | | | | 14 | 105 |
| 2 | 6 | 31 | 26 | 3 | 2 | 16 | 17 | 13 | 1 | 1 | | | |
| 1 | | | | 11 | 128 |
| 3 | 1 | 67 | 13 | 4 | | 4 | 7 | 5 | | | | |
| | | | | | 16 | 117 |
| 4 | 2 | 4 | 7 | | | 3 | 1 | 3 | | | | |
| | | | | | | 20 |
| 5 | 1 | 16 | 11 | 2 | 1 | 5 | 1 | 8 | 2 | | | | |
| | | | | 2 | 49 |
| 6 | 4 | 6 | 5 | 1 | | 2 | 5 | 3 | 2 | | | | |
| | | | | 2 | 30 |
| 11 | | | | | | | | | | | |
| | | | | | | 1 | 1 |
| 31 | | | 11 | | 1 | 1 | 1 | 1 | 1 | | | |
| | | | | | 1 | 17 |
| 37 | | | | | | | | | | | |
| | | | | | | 3 | 3 |
| 54 | | | | | | | | | | | |
| | | | | | | 1 | 1 |
| 56 | | | | | | | | | | | |
| | | | | | | 1 | 1 |
| 57 | | | | | | 1 | 1 | | | | |
| | | | | | | | 2 |
| untyped | | 1 | | | | | | | | | |
| | | | | | | | 1 |
| コクサッキーＡ | 2 | | 3 | 2 | 2 | 22 | 5 | 2 | 5 | | | |
| | | | | | | | 41 |
| 3 | 1 | 1 | | | 7 | 2 | | 1 | | | | |
| | | | | | | 12 |
| 4 | | 3 | 3 | 2 | 57 | 6 | 3 | 15 | 1 | | | | |
| | | | | 6 | 96 |
| 5 | | | | 4 | 14 | 3 | 1 | 4 | | | | |
| | | | | | 2 | 28 |
| 6 | | 2 | 1 | 183 | 32 | 9 | 1 | 8 | 16 | | | |
| | | | | | 4 | 256 |
| 8 | 1 | | | | 10 | 1 | 1 | 2 | | | | |
| | | | | | 1 | 16 |
| 9 | | 1 | 3 | 3 | 1 | 1 | 1 | 3 | 2 | | | | |
1 | 3 | | | | 2 | 21 |
| 10 | | 1 | 2 | 15 | 47 | 14 | | 6 | 4 | | | |
| | | 1 | | | 5 | 95 |
| 12 | | | | | 2 | | | 2 | | | |
| | | | | | | | 4 |
| 14 | | | | 2 | | | | | | | |
| | | | | | | | 2 |
| 16 | | | 3 | 106 | 5 | | | 5 | 1 | | | |
| | | | | | 1 | 121 |
| コクサッキーＢ | 1 | | | 5 | 1 | 3 | 10 | 2 | 6 | 1 | 1 | |
| | | 12 | | | | 6 | 47 |
| 2 | 3 | | 10 | | 4 | 1 | 2 | 3 | | | | |
| | 3 | | | | 5 | 31 |
| 3 | | | 2 | | 1 | 1 | 4 | 8 | 1 | | | |
| | 28 | | | | 6 | 51 |
| 4 | 2 | 3 | 4 | 1 | 9 | 5 | | 14 | | | | |
| | 5 | | | | 3 | 46 |
| 5 | 1 | 5 | 9 | | 3 | 9 | 3 | 14 | 1 | | | | |
| 14 | | | | 1 | 60 |
| エコー | 3 | 1 | 2 | 10 | 3 | 2 | 5 | 5 | 10 | 4 | | |
| | | 8 | | | | 4 | 54 |
| 4 | | | | | | 1 | | | 1 | | |
| | | 4 | | | | 1 | 7 |
| 6 | 2 | | 16 | | | 9 | 7 | 10 | | | | |
| | 45 | | | | 5 | 94 |
| 7 | 3 | 1 | | | | 4 | | 4 | | | | |
| | 1 | | | | | 13 |
| 9 | | | 3 | 1 | | | 1 | | 4 | | | |
| | 6 | | | | 5 | 20 |
| 11 | 1 | 2 | 8 | | 2 | 4 | 1 | 4 | 1 | | 1 | | |
1 | 3 | | | | 3 | 31 |
| 16 | | | 2 | 1 | | 3 | | 2 | 1 | | | |
| | | | | | 2 | 11 |
| 18 | 3 | 3 | 17 | 4 | 2 | 8 | 4 | 12 | 9 | | | | |
| 22 | | | | 1 | 85 |
| 25 | | 3 | 5 | 1 | 1 | | 3 | 2 | 1 | | | |
| | 1 | | | | 2 | 19 |
| 30 | 4 | | 4 | | | 1 | 3 | | | | | |
| | 150 | | | | 1 | 163 |
| パレコ | NT | | | 3 | | | | | 1 | | |
| | | | 1 | | | | | 5 |
| 1 | | | 10 | | | 1 | 1 | 1 | | | | |
| | 1 | | | | 6 | 20 |
| 2 | | | 1 | | | | | | | | |
| | | | | | | | 1 |
| 3 | | 2 | 2 | 6 | | 2 | 2 | 11 | 4 | 1 | | | |
| | | | | 30 | 60 |
| 4 | | | 1 | | | | 2 | 1 | | | | |
| | | | | | | 4 |
| 6 | 1 | | | | | | | 1 | | | |
| | | | | | | 1 | 3 |
| ポリオ | 1 | | 1 | 14 | 2 | 1 | | | 2 | | | |
| | | | | | | | 20 |
| 2 | | | 7 | | 1 | 1 | | | | | | |
| | | | | | 2 | 11 |
| 3 | | | 8 | | | | | 1 | | | |
| | | | | | | | 9 |
| エンテロ | 68 | | | | | | 1 | 11 | 1 | | |
| | | | | | | | 1 | 14 |
| 71 | | | 2 | 38 | 2 | 1 | | 2 | 1 | | | |
| | 3 | | | | 1 | 50 |
| インフルエンザ | AH1pdm | 447 | | | | | 1 | 7 | 3 | | |
| | | | | | | | 1 | 459 |
| AH1 | 283 | | | | | | | | | | |
| | | | | | | 1 | 284 |
| AH3 | 646 | 1 | | | | 2 | 3 | 6 | | | | |
| | | | | | | 658 |
| A | 1 | | | | | | | | | | |
| | | | | | | | 1 |
| Byam | 50 | | | | | | | | | | |
| | | | | | | | 50 |
| Bvic | 28 | | | | | | | | | | |
| | | | | | | | 28 |
| B | 243 | | | | | 1 | | 4 | | | | |
| | | | | | | 248 |
| パラインフルエンザ | 1 | 7 | 3 | | | | 2 | 5 | 4 | | |
| | | | | | | | 3 | 24 |
| 2 | 5 | | | | | 6 | 5 | 13 | | 1 | | |
| | | | | | 3 | 33 |
| 3 | | 14 | 2 | | | 6 | 31 | 9 | | 1 | | |
| | | | | | 1 | 64 |
| RSウイルス | 15 | 1 | 1 | | | 14 | 101 | 20 | | 1 | | |
| | | | | | 13 | 166 |
| レオ | | | 1 | | 1 | | | 1 | | | |
| | | | | | | | 3 |
| ライノ | 16 | 18 | 2 | 3 | 2 | 30 | 53 | 25 | | | | |
| | 1 | | | | 15 | 165 |
| ヒトメタニューモ | 10 | 5 | | | | 6 | 45 | 27 | | | |
| | | | | | | 11 | 104 |
| ヒトボカ | 1 | 1 | 2 | | | 5 | 15 | 10 | | | | |
| | | | | | | 34 |
| サフォードカルディオ | | 1 | | | | 1 | | 3 | | | |
| | | | | | | 1 | 6 |
| コロナ | | | | | | 1 | | | | | |
| | | | | | | | 1 |
| エンテリック・アデノ | | 1 | 37 | | | | 1 | | | | |
| | | | | | | | 39 |
| ロタ | A群 | | | 306 | | | | 1 | | | |
| | | | | | | | 2 | 309 |
| C群 | | | 3 | | | | | | | | |
| | | | | | | | 3 |
| ノロ | G1 | | | 52 | | | | | | | |
| | | | | | | | | 52 |
| G2 | | | 492 | | | | 1 | | | | |
| | | | | | | 2 | 495 |
| サポ | | | 115 | | | | | | | | |
| | | | | | | | 115 |
| アストロ | | | 54 | | | | | | | | |
| | | | | | | | 54 |
| 単純ヘルペス | 1 | 8 | 1 | | | 4 | 2 | | 4 | | | |
| | | | | | 8 | 9 | 36 |
| 2 | | | | | | | | | | | |
| | | | | | | 1 | 1 |
| 麻しん | | | | | | | | | | 6 | |
| | | | | | | | 6 |
| 風しん | | | | | | | | | | 2 | 54 |
13 | | | | | | | | 69 |
| ムンプス | | | | | | | | | | | |
| | 5 | | | | | | 5 |
| パルボB19 | | | | | | | | | 3 | 15 | 2 |
| 2 | | | | | | | 22 |
| ＳＦＴＳ | | | | | | | | | | | |
| | | | | 6 | | | 6 |
| A型肝炎 | | | | | | | | | | | |
| | | | | | | 2 | 2 |
| 検出数計 | 1800 | 230 | 1315 | 392 | 239 | 228 | 371 | 338 | 66 | 29 | 57 | 13 |
2 | 7 | 312 | 1 | 6 | 8 | 224 | 5638 |
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